Durable lymph-node expansion is associated with the efficacy of therapeutic vaccination – Nature.com
							May 7, 2024
							Vaccine formulation alters the durability of LN expansion    
    First, we identified a vaccine formulation eliciting robust and    durable LN expansion. Mesoporous silica (MPS) rod-based    vaccines, previously found to elicit strong cellular and    humoral responses against diverse antigen targets compared with    a traditional bolus (liquid) vaccine, were    explored18,19,20,21. These    high-aspect ratio, silica-based nanoparticles can adsorb    vaccine antigens and adjuvants for sustained release, and form    a three-dimensional scaffold promoting antigen-presenting cell    (APC) recruitment in mouse models. MPS vaccines previously    induced potent and long-lived germinal centre responses    dependent on sustained antigen release from the vaccine    site22,23. Here, MPS rods    used in vaccine formulation had an average length of 85.9m    and released vaccine components cytosine-guanosine    oligodeoxynucleotide (CpG) and granulocyte-macrophage    colony-stimulating factor (GM-CSF) in a sustained manner    (Extended Data Fig. 1ae). Draining (dLN;    ipsilateral to vaccine site) and non-draining (ndLN;    contralateral) inguinal LNs of mice immunized with MPS or bolus    vaccines were imaged for 100days post-vaccination using HFUS.  
    Although PBS injection did not affect LN volume, both vaccine    formulations induced LN expansion, but with markedly different    durability (Fig. 1a,b and Supplementary    Fig. 1ac). At the early    stage of expansion (within days), both MPS and bolus-vaccinated    mouse LNs expanded to a similar extent (Fig. 1c). However, while the    bolus vaccine LNs peaked at this time, resulting in a two-fold    transient increase in LN volume, the MPS vaccine induced a    significantly more substantial (~7) LN expansion over 1week    which was maintained for ~3weeks (Fig. 1b,c). Although LN    volume in the MPS-vaccinated mice began to decrease ~20days    after immunization, it remained elevated out to 100days    (Supplementary Fig. 1d). NdLNs did not    change in volume with either vaccine, and normalizing the dLN    to ndLN volume within each mouse indicated a similar pattern of    dynamic LN expansion and contraction (Fig. 1d    and Supplementary Fig. 1e). The removal of    either CpG or GM-CSF from the vaccine formulation diminished    the magnitude of dLN expansion (Extended Data Fig.    2a). An MPS vaccine    with log-fold lower doses of ovalbumin (OVA) and CpG also    induced long-term LN expansion (Extended Data Fig.    2b). While other    published depot-based vaccine formulations including alum, MF59    emulsion and cryogel-based scaffolds also induced LN expansion,    expansion was notably lower than with the MPS vaccine (Extended    Data Fig. 2c). The MPS vaccine    formulation was thus selected as a model of strong    vaccination resulting in persistent LN expansion for subsequent    investigation.  
            Mice were immunized with MPS or bolus vaccines            delivering GM-CSF, CpG and OVA protein, and compared to            PBS-injected controls. Vaccine-draining and            non-draining LNs were longitudinally imaged using HFUS.            a, Representative HFUS images of            vaccine-draining LNs (defined by yellow dashed area)            out to 100days after vaccination. Scale bar, 2 mm.            b, Quantification of vaccine-draining LN volume            over time. Statistical analysis was performed using a            two-way analysis of variance (ANOVA) with repeated            measures. Significance relative to the PBS group is            depicted at each timepoint (*P<0.05,            **P<0.01, ***P<0.001,            ****P<0.0001). Exact P values            between MPS and PBS are P=0.04, day 3;            P=0.0008, day 5; P=0.006, day 7;            P=0.01, day 9; P=0.001, day 11;            P=0.004, day 13; P=0.004, day 15;            P=0.03, day 17; P=0.01, day 37;            P=0.001, day 44; P=0.01, day 62.            Exact P values between bolus and PBS are            P=0.009, day 1; P=0.02, day 5;            P=0.03, day 9; P=0.008, day 11;            P=0.04, day 44. c, Plots of LN volume            among groups on days 3 (left) and 19 (right).            Statistical analysis was performed using ANOVA with            Tukeys post hoc test. d, Representative HFUS            images of MPS or bolus vaccine-draining or non-draining            LNs 15days after vaccination (left) and quantification            of dLN/ndLN volume ratio (right). Statistical analysis            was performed using ANOVA with Tukeys post hoc test.            For ad, n=7 (MPS and bolus) or            8 (PBS) biologically independent animals per group,            imaged longitudinally in two cohorts; meanss.d.          
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    To assess tissue-scale alterations involved in durable LN    expansion, LN mechanical properties and extracellular matrix    (ECM) distribution were next characterized. Here,    MPS-vaccinated mouse dLNs were collected 7days after    immunization, beyond the initial expansion phase (when MPS    outpaced bolus vaccine LN expansion). At this time, LN collagen    architecture was largely maintained, as expected (Fig.    2a)6. Hyaluronic acid    (HA) localization was increased in the periphery/follicle, most    visibly 7days after immunization, although still notable up to    3weeks later, demonstrating persistent alterations (Fig.    2a,b and Supplementary    Fig. 2a). In contrast, the    cellular F-actin signal was greater towards the centre of both    control and MPS dLNs, with greater polarization between the    centre and periphery in the MPS condition (Fig. 2c    and Supplementary Fig. 2bd). These changes    suggest that LN expansion may be accompanied by changes in    tissue mechanical properties, as both HA and F-actin are    involved in cellular mechanotransduction and signalling    pathways. Through nanoindentation of thick (~500m) LN slices    (Fig. 2d), we found that LNs    with enduring expansion had reduced stiffness (G) and    loss modulus (G) compared with control LNs (Fig.    2e,f). Viscoelasticity,    measured by G/G (tan()), was    significantly increased in MPS dLNs compared with LNs from    control mice, suggesting decreased matrix crosslinking (Fig.    2g).  
            Mice were treated with MPS vaccines (delivering GM-CSF,            CpG, OVA) or PBS, and LNs were collected after 7 and            20days. a, Representative immunohistochemistry            (IHC) images depicting LN ECM on day 7. b,            Representative IHC image depicting LN ECM on day 20.            c, Representative IHC images of LNs stained for            F-actin on day 7. For ac, n=3            biologically independent animals per group. d,            Schematic depicting nanoindentation of a thick LN slice            (above) and experimental timeline (below).            eg, Mean G (e), G            (f) and tan() (g) across LNs.            Statistical analysis was performed using MannWhitney            test (e) or two-tailed t-test            (f,g). h, Heat maps depicting            G across individual LNs. Scale bar, 1mm.            i, Mean G of sample points across each            LN, separated into those collected at the centre or            periphery. n=11 (control, centre), 10 (MPS,            centre), 16 (control, periphery) and 15 (MPS,            periphery) biologically independent animals per group;            results are means.d., combined from three            independent experiments. Statistical analysis was            performed using MannWhitney test. j, Plot of LN            mass versus mean G. For eg,            i and j, each data point represents a            unique LN per mouse; n=10 (MPS) or 11 (PBS)            biologically independent animals per group;            means.d., combined from two independent experiments.            k, Representative IHC images depicting Hoechst            stain within LNs on day 7. Scale bar, 100m. l,            Quantification of Hoechst signal across LNs;            n=3 (MPS) or 4 (PBS) biologically independent            animals per group; means.d.          
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    Spatial variations in mechanics across LNs were next    investigated using nanoindentation (Fig. 2h and Supplementary    Fig. 3). Both control and    MPS-vaccinated mouse LNs were softer and more viscoelastic in    the centre than in the periphery, and this finding was    confirmed through intentional sampling at the centre or    periphery of nave LNs (Supplementary Fig. 4ae). The LN    periphery (~12kPa) was approximately twice as stiff as the    centre (~6kPa). Interestingly, after vaccination, LN G    and G were only significantly altered at the periphery,    while tan() increased only in the LN centre (Fig.    2i and Supplementary    Fig. 5ae). LN peripheral    stiffness correlated negatively with LN mass, suggesting that    the degree of tissue softening relates to the extent of LN    enlargement induced by vaccination (Fig. 2j). LN cellular    distribution and tissue density remained unaltered, despite    expansion (Fig. 2k,l and Supplementary    Fig. 6ad). Taken    together, these results suggest that LN tissue encompasses a    range of mechanical properties, dependent on location within    the node, and these parameters change as LNs expand.  
    Considering that tissue-level changes may impact or reflect    cellular responses, changes in LN cellularity during expansion    were next characterized, ranging from early-stage (day 4) to    long-term (day 51) changes (Supplementary Figs. 7 and 8a). Cellular    expansion was greater and more sustained in MPS-vaccinated mice    than in the bolus-vaccinated mice or PBS-injected control;    notably, the total cell counts within a LN correlated with its    volume (Fig. 3a,b). As early as day    4, monocytes, neutrophils and macrophages were expanded in MPS    dLNs, while conventional dendritic cells (DCs), plasmacytoid    DCs and T cells peaked at day 7 before declining over time    (Fig. 3c,d and Supplementary    Fig. 8bi). Monocytes in    particular expanded ~80-fold in MPS dLNs compared with PBS    controls 4 days after vaccination, relative to ~25 expansion    in the bolus group, but this increase was maintained for    several weeks in the MPS condition only (Supplementary Fig.    8n). B cells also    significantly expanded by day 7 and remained elevated until day    17 (Fig. 3e). A variety of    stromal cells expanded following MPS vaccination, typically    peaking later (days 1117) than the immune cells, except for    natural killer (NK) cells, which also tended to expand later    (days 711) (Fig. 3f and Supplementary    Fig. 8jm). By comparison,    changes in the bolus vaccine group were more modest beyond    4days, and PBS-treated control dLNs and ndLNs from all groups    demonstrated minimal changes in cell populations. These results    indicate that vaccine-induced LN expansion engages the temporal    dynamics of a pathogen-induced immune response, with innate    immune cells rapidly responding followed by lymphocytes at    later times.  
            Mice were immunized with MPS or bolus vaccines            containing GM-CSF, CpG and OVA protein, euthanized on            days 4, 7, 11, 17 and 51 for LN collection and analysis            through flow cytometry and compared to PBS-injected            controls. a, Total LN cell counts over time.            b, Linear regression of LN cell count on a given            day versus volume (measured through HFUS).            cf, Numbers of dendritic cells            (c), T cells (d), B cells (e) and            follicular dendritic cells (FDCs; CD45            CD31 CD21/35+) (f) over            time. For af, n=4 (MPS dLN days            4, 11 and MPS ndLN day 7) or 5 (all other timepoints            and groups) biologically independent animals per group            per timepoint; means.d. For a and            ce, statistical analysis was performed            using ANOVA with Tukeys post hoc test; differences            present between one group and all other groups are            shown. For f, statistical analysis was performed            using KruskalWallis test with Dunns post hoc test;            the statistical difference between the MPS and PBS dLN            groups is shown. For gj, mice were            injected with MPS or bolus vaccines (GM-CSF, CpG, OVA)            and dLNs were collected at a late timepoint (days            2021). Nave mice were included as controls.            n=5 biologically independent animals per            group, barcoded and pooled for sequencing. g,            Schematic of processing pipeline for single-cell            sequencing. LNs were digested and FACS-sorted to enrich            live, CD45+ CD3 CD19            cells for sequencing. h, UMAP of 20,858 cells            across conditions coloured by cluster membership.            i, UMAP as in h, here coloured by cell            density. Red indicates high cell density, blue low            density. j, Heat map of relative average            expression of marker genes in each cluster from            h. Colour bar indicates relative gene expression            as z-score. a.u., arbitrary units. k,            Frequency of individual cell clusters within each            sample. Statistical analysis was performed using ANOVA            with Tukeys post hoc test. pDCs, plasmacytoid DCs;            Mig., migratory; Infl., inflammatory.          
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    Because LN expansion is known to be mediated by myeloid    interactions with LN stromal cells, we next performed    single-cell RNA sequencing (scRNA-seq) on the LN myeloid    compartment after vaccination (Fig. 3g and Supplementary    Fig. 9a)2. LNs were    examined at a late timepoint (days 2021) to consider mediators    of durable expansion. After removal of lymphocytes and stromal    cells, we identified nine clusters from the remaining 20,858    cells analysed (Fig. 3hj). Clusters were    annotated as type-2 conventional DCs (cDC2s; c0, Sirpa,    H2-Ab1), plasmacytoid DCs (c1, Siglech,    Bst2), migratory DCs (c2, Ccr7, Clu),    type-1 conventional DCs (c3, Xcr1, Clec9a),    Langerhans cells (c4, Cd207), plasma cells (c5,    Ighg2b, Ighg1), inflammatory monocytes (c6,    Csf1r, Ly6c2), neutrophils (c7, S100a8,    S100a9) and proliferating cDC2s (c8, Top2a,    Mki67) (Fig. 3j and Supplementary    Fig. 9b). Consistent with    the flow cytometry analysis, scRNA-seq identified broad changes    in LN cell populations after immunization, with notable    differences based on vaccine strength (Fig. 3i,k). Compared with    the PBS condition, both bolus and MPS vaccines increased DC2    proportions and decreased frequencies of migratory DCs and    DC1s. Maintenance of LN expansion was associated with increased    frequencies of inflammatory monocytes and plasma cells and    decreased Langerhans cells (Fig. 3k).  
    Given the importance of sustained antigen presentation in    maintenance of LN immune responses24,25, we hypothesized    that vaccine antigen availability and APC populations may    affect LN expansion. Compared with LNs of mice given the full    MPS vaccine, LNs of mice given an MPS vaccine without antigen    became prominently less enlarged and contracted sooner (Fig.    4a,b and Extended Data    Fig. 3a). This indicates    that long-term antigen presentation at the vaccine site is    important for sustained LN expansion. Indeed, injecting the    antigen separately as a bolus (that is, not delivered from the    MPS scaffold) similarly reduced the degree and duration of    expansion, indicating a critical role of sustained antigen    presentation (Extended Data Fig. 3b).  
            a,b, Mice were immunized on day 0 with a            full MPS vaccine (containing GM-CSF, CpG and OVA            protein) or an MPS vaccine without antigen (GM-CSF and            CpG only). LN volume was tracked using HFUS imaging.            n=5 biologically independent animals per            group. a, Representative HFUS images of            vaccine-draining LNs. Scale bar, 2 mm. b,            Quantification of LN volume over time. Statistical            analysis was performed using two-tailed t-tests.            For a and b, n=5 biologically            independent animals per group. cj, Mice            were injected with MPS or bolus vaccines (GM-CSF, CpG,            OVA) and dLNs were collected at a late timepoint (days            20 and 21). Nave mice were included as controls.            n=5 biologically independent animals per            group, barcoded and pooled for sequencing. c,            Numbers of differentially expressed protein coding            genes by cell type between the MPS and bolus            conditions. P value calculated using DESeq2.            d, Volcano plot displaying differentially            expressed cDC2 genes between the MPS and bolus            conditions. e, Ltb (lymphotoxin )            expression among DC subtypes in the different            conditions. f, Proportion of inflammatory            monocytes (cluster 6 from Fig. 3h) in LNs.            g, UMAP of 1,468 inflammatory monocytes coloured            by cluster membership. h, UMAP as in g,            here coloured by cell density. Red indicates high cell            density, blue low density. i, Proportion of            cluster c0 among inflammatory monocytes. j,            Pathway analysis for inflammatory monocyte cluster c0.            For c and d, statistical analysis was            performed with DESeq2. For f and i,            statistical analysis was performed using ANOVA with            Tukeys post hoc test.          
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    To identify potential mediators of this differential response,    we next focused the analysis of our scRNA-seq dataset on LN APC    populations. Broadly, we identified varying numbers of    differentially expressed genes within immune cell clusters    between the MPS and bolus vaccine conditions (Fig.    4c). The most dramatic    transcriptional changes were in the LN-resident cDC2 and cDC1    compartments, more so than in migratory DCs and Langerhans    cells. The cDC2s showed the greatest number of differentially    expressed protein coding genes between the two vaccine    strengths (Fig. 4c,d), and consensus    non-negative matrix factorization (cNMF)    analysis26 identified a    cDC2-specific programme (CNMF_X14) enriched with MPS    vaccination (Supplementary Fig. 10ad). This    programme included genes involved in inflammation    (Il1r2m, Cd86), immune regulation    (Clec4a2, Sirpa, Lst1), cell migration    machinery (Rasgef1b, Elmo1) and smooth muscle    contraction (Ppp1r14a) (Supplementary Fig.    10d). Furthermore,    the gene encoding lymphotoxin beta (Ltb), another member    of CNMF_X14, was strongly upregulated in cDC2s with MPS    vaccination relative to the bolus condition (Fig.    4d,e and Supplementary    Fig. 10d,e). The    involvement of mechanosensing genes and Ltb, involved in    lymphoid organogenesis, suggests that cDC2s may both respond    and contribute to the changing LN microenvironment during    expansion. Despite robust LN expansion and immune activation,    Cd274 (PD-L1) was not notably upregulated on myeloid    cell subsets 20days after immunization (Supplementary Fig.    11a,b). MPS    immunization also increased the frequency of    CD19 plasma cells and directed gene    expression towards more mature immunoglobulin (Ighg1    versus Ighm) expression (Supplementary Fig.    12ad).  
    Inflammatory monocytes demonstrated significant transcriptional    changes between the MPS and bolus vaccine groups (Fig.    4c), and the greatest    expansion by both total number and relative proportion    following MPS vaccination (Fig. 4f and Supplementary    Fig. 8n). Therefore, we    were interested in how MPS vaccination affected their gene    expression profile. Monocytes, similar to DCs, can present    antigen to T cells in LNs27, and particular    attention was paid to potential T cell interactions.    Monocyte-specific clustering identified three subpopulations of    inflammatory monocytes (Fig. 4g,h). Of these, c0    formed the predominant monocyte phenotype in LNs with sustained    expansion (MPS condition) relative to nave or bolus-vaccinated    mice (Fig. 4h,i). Gene set    enrichment analysis identified pathways associated with antigen    processing and presentation, IFN response and inflammatory    signalling that differentiated monocytes in the strong and weak    vaccine LNs (Fig. 4j). These gene    alterations position inflammatory monocytes as a potential    stimulatory, APC type involved in sustained LN expansion.  
    To confirm the impact of vaccine strength on    antigen-presenting, inflammatory monocytes, LNs of mice    vaccinated with the MPS vaccine (with or without antigen) were    collected and further compared to LNs of mice given bolus or    PBS controls (Fig. 5a). Consistent with    the scRNA-seq analysis, Ly6Chi inflammatory    monocytes27,28 comprised the    majority (~6070%) of LN monocytes in the MPS group over time,    significantly higher than the PBS and bolus groups (~4050%) by    day 20 (Supplementary Fig. 13a,b). Inflammatory    monocytes were also significantly expanded in terms of number    and proportion in the LNs of MPS-vaccinated mice at day 20    compared with the PBS and bolus, and were visualized in LNs    through CCR2 expression (Fig. 5b and Supplementary    Fig. 13c,d)29. Inflammatory    monocyte responses were abrogated at later timepoints when the    MPS vaccine was delivered without antigen, equivalent to the    PBS or bolus controls by day 20, suggesting a relationship    between long-lived antigen presentation, LN expansion and    monocyte responses (Fig. 5b). Consistent with    scRNA-seq data and previous investigation on the MPS vaccine    system, MPS immunization elicited robust and persistent    germinal centre B cell responses, also dependent on the    presence of antigen in the vaccine (Extended Data Fig.    4ac).  
            Mice were treated with MPS or bolus vaccines            (containing GM-CSF, CpG, OVA), MPS vaccine without            antigen (GM-CSF, CpG only) or PBS, and LNs were            collected on days 7, 14 and 20 for cellular analysis.            n=5 biologically independent animals per group            per timepoint. a, Experimental timeline and            conditions. b, Inflammatory monocyte number in            LNs over time. Statistical analysis was performed using            ANOVA with Tukeys post hoc test. c,            Representative flow cytometry histograms depicting            MHCII expression on Ly6hi inflammatory            monocytes. Median percentage MHCII expression in each            group is listed on the right. d, MHCII            expression on Ly6hi inflammatory monocytes            in the LN at day 20. Statistical analysis was performed            using ANOVA with Tukeys post hoc test. For b            and d, meanss.d. eh, Mice were            administered MPS vaccines (containing GM-CSF, CpG, OVA)            or PBS. One group of MPS-vaccinated mice was treated            with MC-21 CCR2-depleting mAb daily from days 15            (MC-21 expansion) and one group was treated daily            from days 1014 (MC-21 maintenance). Peripheral blood            was collected on days 6, 8, 14 and 20 for cellular            analysis. n=5 biologically independent animals            per group. e, Experimental timeline and            conditions. f, Inflammatory monocyte proportion            in blood over time. Differences between groups are            statistically significant (day 6 MPS versus MPS/MC-21            expansion, P=0.005; day 6 MPS versus PBS,            P=0.03; day 8 MPS versus PBS,            P=0.001; day 14 MPS versus MPS/MC-21            maintenance, P<0.0001; day 14 MPS versus            PBS, P=0.002). Significant differences between            the MPS group and other groups are indicated on the            figure (*P<0.05, **P<0.01,            ***P<0.001, ****P<0.0001).            g, Proportion of effector CD8+ T            cells (CD44+ CD62L) in blood            over time. h, Proportion of            OVA-tetramer+ of CD8+ T cells in            peripheral blood 20days after vaccination.            Statistical analysis was performed using ANOVA with            Tukeys post hoc test. For fh,            meanss.d. For f and g, statistical            analysis was performed using KruskalWallis test with            Dunns post hoc test (day 6 timepoint) or ANOVA with            Tukeys post hoc test (days 8, 14, 20). For b,            f and h, only differences between one            group and all other groups are shown            (*P<0.05, **P<0.01,            ***P<0.001, ****P<0.0001).          
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    Unlike LNs, spleens did not demonstrate superior cellular    expansion after MPS vaccination compared with other vaccine    groups (Extended Data Fig. 5a). Although total    numbers of splenic immune cells including B cells and DCs were    largely unaffected by vaccination, transient increases in T    cells and macrophages were detected (Extended Data Fig.    5be). Notably,    significantly higher numbers and proportions of inflammatory    monocytes were found in MPS-vaccinated mouse spleens compared    with all other conditions on day 20 (Extended Data Fig.    5f,g). These cells    also remained elevated in circulation at the latest timepoint    (Extended Data Fig. 5h).  
    Inflammatory monocytes in the MPS group displayed    characteristics of antigen presentation; MHCII expression    significantly increased in the MPS vaccine group compared with    all others several weeks after vaccination (Fig. 5c,d). Numbers of    monocyte-derived DCs (CD11c and MHCII-expressing    Ly6Chi monocytes) were also significantly increased    in the MPS-vaccinated dLN at this time compared with    PBS-treated mice, or any condition in the spleen (Extended Data    Fig. 6a). In the spleen,    MHCII expression on inflammatory monocytes was unaltered with    vaccination (Extended Data Fig. 6b). These results    indicate that Ly6Chi monocytes induced by MPS    vaccination may engage in antigen presentation, specifically    within the LN compartment.  
    To further discern the impact of inflammatory monocytes on    lymph-node expansion and vaccine response, specific depleting    reagents were next employed. MPS-vaccinated mice were treated    with the CCR2-targeting MC-21 monocolonal antibody    (mAb)30,31,32 either early    (days 15, LN expansion phase) or later (days 1014, LN    maintenance phase) after immunization (Fig. 5e). MC-21 mAb    effectively depleted Ly6Chi monocytes in the blood,    LN and MPS scaffold during the treatment course, although    numbers in the blood rebounded within days (Fig. 5f    and Supplementary Fig. 14ac). Early    depletion of Ly6Chi monocytes delayed the effector    CD8+ T cell response to vaccination, which peaked    later, after monocytes had been restored, relative to the MPS    vaccine group (Fig. 5g). Furthermore, only    the MPS-vaccinated group treated early with MC-21 antibody had    significantly elevated tetramer-specific CD8+ T    cells by day 20, after the monocyte rebound, compared with the    PBS controls (Fig. 5h). Administration of    MC-21 mAb in the later phase of the LN response (days 1014)    had no discernible impact on the T cell response. These results    further suggest a role of inflammatory monocytes in effector    CD8+ T cell responses to MPS vaccination,    potentially through direct antigen presentation or inflammatory    stimulation.  
    LN expansion kinetics in the absence of inflammatory monocytes    or other immune cell subsets were next assessed. MC-21 mAb    and/or clodronate liposomes were used to deplete    Ly6Chi monocytes and macrophages, respectively    (Extended Data Fig. 7a). Lymphocyte    (anti-CD4, CD8 and B220) and neutrophil (anti-Ly6G) antibodies    were also tested. No differences were observed in the magnitude    or kinetics of LN expansion with depletion of any immune cell    subset alone (Extended Data Fig. 7bg). However,    depleting both inflammatory monocytes and macrophages together    restrained the maintenance of LN expansion (Extended Data Fig.    7h). Taken together,    these data indicate a stimulatory and antigen-presenting role    of inflammatory monocytes, and that these cells in association    with macrophages may be required for sustained LN expansion.  
    Finally, we considered whether durable LN expansion could    indicate functional outcomes of vaccination. In a therapeutic    model of mouse melanoma, LN expansion after vaccination against    a tumour-expressed antigen was not affected by tumour presence    (Supplementary Fig. 15ac). The MPS    vaccine generated stronger adaptive immune responses than the    bolus vaccine, leading to therapeutic benefit (Fig.    6ac and Supplementary    Figs. 15dg and    16ac). Importantly,    LN expansion associated positively with antibody titres,    CD8+ T cell responses and antitumour efficacy of    cancer vaccine formulations (Fig. 6df and Supplementary    Fig. 17ac). The degree of    LN expansion also correlated strongly with effector    CD8+ T cell proportions following vaccination across    experiments (Supplementary Fig. 17d). In a    tumour-free setting, MPS vaccination also enhanced long-term    antibody production (day 90) and splenic CD8+ T cell    (day 103) responses as compared with the bolus vaccine, and    responses associated with earlier degree of LN expansion    (Extended Data Fig. 8af). Sustained    inflammatory cytokine expression in splenic CD8+ T    cells suggested a long-lived adaptive immune response in    multiple lymphoid organs.  
            Mice were inoculated with B16-OVA melanoma tumours and            3days later treated with MPS or bolus vaccines            containing GM-CSF, CpG and OVA protein, and compared to            PBS-injected controls. A fourth group of tumour-free            mice was treated with MPS vaccines (called MPS, no            tumour). Inguinal dLNs were imaged using HFUS at            multiple timepoints, and blood was collected 8 and            21days after vaccination to assess T cell responses            and serum antibody titres, respectively. n=6            (MPS, B16-OVA) or 5 (all other groups) biologically            independent animals per group. a, Serum anti-OVA            IgG2a antibody titre 21days after immunization.            Statistical analysis was performed using KruskalWallis            test with Dunns post hoc test. b,c, T            cell analysis in the peripheral blood 8days after            immunization. b, Representative flow cytometry            plots of OVA-tetramer binding to CD8+ T            cells. c, Proportion OVA-tetramer+ of            CD8+ T cells in blood. Statistical analysis            was performed using ANOVA with Tukeys post hoc test.            For a and c, meanss.d. d, LN            fold expansion 7days after vaccination versus blood            IFN+ CD8+ T cell response to            SIINFEKL restimulation 8days after vaccination.            e, LN fold expansion 7days after vaccination            versus anti-OVA IgG1 titres 21days after vaccination.            f, LN fold expansion 7days after vaccination            versus tumour area at the latest timepoint with all            mice surviving (day 21).          
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    We next assessed potential indicators of toxicity or T cell    dysfunction that could result from sustained LN expansion. In    MPS-vaccinated mice, serum HMGB-1 levels, indicative of    inflammatory cytokine responses and/or cellular    death33,34, were comparable    to PBS controls (Extended Data Fig. 8g). Long-term (day    103) PD-1 expression on splenic T cells was also not different    between the MPS vaccine group and PBS controls (Extended Data    Fig. 8h,i). Mice monitored    for 485days after MPS vaccination did not display changes in    weight, LN or spleen cell counts, or proportions of immune cell    subsets in blood or secondary lymphoid organs, although    elevated OVA-specific CD8+ T cells remained    detectable in all immune compartments investigated (Extended    Data Fig. 9ai). Furthermore,    MPS vaccine-generated T cells retained functional,    antigen-specific antitumour response when challenged 50 days    after immunization (Extended Data Fig. 10ac). Altogether,    these results suggest that enduring LN expansion is associated    with immune memory and antitumour efficacy, without indications    of T cell dysfunction.  
    To explore whether LN expansion could directly improve vaccine    efficacy, the MPS vaccine without antigen (Fig. 4a,b) was employed to    jump-start LN expansion before administration of a full,    antigen-containing bolus vaccine (Fig. 7a). LNs of mice given    the antigen-free MPS jump-start expanded over the first week    and continued to increase in size after administration of the    bolus vaccine, becoming significantly enlarged compared with    all other groups (Fig. 7b). The jump-start    plus bolus vaccine broadly improved vaccine responses compared    with the traditional bolus vaccine. The proportion of    OVA-tetramer+ CD8+ T cells in blood was    significantly increased in this condition (Fig. 7c,d). Blood    CD8+ T cells restimulated ex vivo with SIINFEKL    peptide had superior cytokine production (IFN and TNF) with    the jump-start (Supplementary Fig. 18ac), and the    jump-start also increased the proportion of effector    CD8+ T cells and decreased the blood CD4/CD8 T cell    ratio relative to mice given the bolus vaccine alone    (Supplementary Fig. 18d,e). The    combination treatment improved short- and long-term IgG2a    antibody titres, with 10/10 (versus 6/10 with the bolus only)    detectable IgG2a titres after 100 days (Fig. 7e    and Supplementary Fig. 18f). In these    experiments, the jump-start was dosed 7days before the bolus    vaccine to match the peak of LN enlargement (Supplementary Fig.    19a). Spacing the    jump-start closer to bolus vaccination (4days) tended to    increase antigen-specific cytokine expression (IFN and TNF)    and OVA-tetramer binding; however, increasing the dose    separation (11days) increased granzyme B and reduced PD-1    expression, suggesting that the timing of jump-start and bolus    vaccination can alter functional T cell outcomes, and the day 7    timepoint balances both sets of outcomes (Supplementary Fig.    19bh). All    additional experiments were conducted with a 7-day spacing. In    treating B16-OVA tumour-bearing mice, the jump-start strategy    (Supplementary Fig. 20a,b) elicited    prolonged tumour regressions compared with the bolus vaccine,    which induced only transient tumour regressions, with all mice    in this condition eventually succumbing to tumour burden within    50days. In the jump-start plus bolus group, 25% of mice    survived at 200days, a significant improvement over all other    groups (Fig. 7f,g). In summary,    jump-starting LN expansion before vaccine administration    improved T cell responses and antitumour efficacy in a model    antigen tumour model.  
            a, Experimental timeline for be;            mice were injected with PBS or a bolus vaccine on day            0, or injected with an MPS no-antigen jump-start on            day 7 followed by PBS or a bolus vaccine (GM-CSF, CpG            and OVA protein) on day 0. Mice were bled after 8 and            21days for T cell analysis and serum antibody titres,            respectively. b, LN expansion measured by HFUS            imaging. Values are normalized to the baseline volume            for each individual LN. n=5 biologically            independent animals per group; only differences between            one group and all other groups are shown. c,            Representative flow cytometry plots depicting            CD8+ T cell OVA-tetramer binding in cells            derived from blood on day 8. d,            OVA-tetramer+ proportion of CD8+            T cells. e, Anti-OVA IgG2a titre on day 21.            Statistical analysis was performed using KruskalWallis            test with Dunns post hoc test. f,g, Mice            bearing B16-OVA tumours (inoculated on day 8) were            treated starting at day 7 as per studies in            ae with an MPS jump-start (MPS            material, GM-CSF and CpG without antigen) or left            untreated, and then injected with a bolus vaccine            (GM-CSF, CpG and OVA) or left untreated at day 0.            Tumour growth and survival were tracked. f,            Tumour growth curves. n=10 biologically            independent animals per group. g, KaplanMeier            curves depicting survival. n indicates            naive/non-vaccinated (n+bolus, naive + bolus            vaccine; jump-start+n, jump-start + naive;            n+n, naive + non-vaccinated). Statistical            analysis was performed using log-rank (MantelCox)            test, correcting for multiple comparisons.            n=17 (n/n) or 16 (all other            groups) biologically independent animals per group;            results are combined from two independent experiments,            the second performed in a blinded manner. For b            and d, statistical analysis was performed using            ANOVA with Tukeys post hoc test. For            ce, n=9 (PBS) or 15 (all other            groups) biologically independent animals per group;            results are combined from two independent experiments.            For b, d and e, meanss.d.          
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    Finally, we assessed the impact of a booster vaccine format on    LN expansion kinetics and adaptive immune responses. Following    the MPS prime vaccine, dLN volume increased over the following    12weeks and declined by day 42 (Supplementary Fig.    21a,b). On day 43, a    booster MPS vaccine was delivered, and this led to more    immediate LN expansion, reaching peak volumes within 4days,    compared with day 7 with the initial vaccine. Seven days after    the booster vaccine, peripheral blood was collected and    compared to mice that had received only prime vaccination at    the same timepoint as the boost in the prime-boost group. No    differences in the IFN+ proportion of    CD8+ T cells after OVA peptide restimulation were    detected; however, the IFN+ proportion of    CD4+ T cells was significantly increased relative to    both nave control mice and mice that had received only prime    vaccination (Supplementary Fig. 21c,d). The    proportion of effector-phenotype (CD44+    CD62L) CD8+ T cells was elevated with    the MPS prime and further increased after the booster    (Supplementary Fig. 21e). Both IgG1 and    IgG2a titres against OVA were increased after the booster dose    compared with either the same mice on day 21 (pre-boost) or the    prime-only mice at the same timepoint (Supplementary Fig.    21f,g). These results    indicate that a booster vaccine may elicit more rapid LN    expansion along with a stronger adaptive immune response.  
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